Usage: mlmm add-elem-info [OPTIONS]
Add/repair element columns (77–78) in a PDB using Biopython.
Options:
-v, --verbose LEVEL Console verbosity 0-3 (default 2). 0=silent;
1=milestones only; 2=+detailed step logging and
deliverable paths; 3=everything (full config
blocks, per-file paths, DEBUG logging).
[0<=x<=3]
--help-advanced Show all options (including advanced settings)
and exit.
-i, --input FILE Input PDB filepath [required]
-o, --out FILE Output PDB filepath (omit to overwrite input)
--overwrite / --no-overwrite Re-infer and overwrite element fields even if
present (by default, existing values are
preserved). [default: no-overwrite]
-h, --help Show this message and exit.