Usage: mlmm oniom-import [OPTIONS]
Import ONIOM input (Gaussian g16 or ORCA) and reconstruct XYZ + B-factor
layered PDB.
Options:
-v, --verbose LEVEL Console verbosity 0-3 (default 2). 0=silent;
1=milestones only; 2=+detailed step logging and
deliverable paths; 3=everything (full config blocks,
per-file paths, DEBUG logging). [0<=x<=3]
--help-advanced Show all options (including advanced settings) and
exit.
-i, --input FILE Input ONIOM file (.gjf/.com for g16, .inp for ORCA).
[required]
--mode [g16|orca] Input mode. If omitted, inferred from input suffix.
-o, --out-prefix PATH Output prefix. Defaults to input stem in the current
working directory.
--ref-pdb FILE Reference PDB to preserve atom naming/residue metadata
(atom count must match).
-h, --help Show this message and exit.